{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://raw.githubusercontent.com/yazalj/bulk-atacseq-mature-memory-nk/main/agent/schemas/samples.schema.json",
  "title": "Normalized bulk paired-end ATAC-seq sample registry rows",
  "description": "Schema for row objects after TSV values such as order have been type-coerced.",
  "type": "array",
  "minItems": 2,
  "items": {
    "type": "object",
    "additionalProperties": true,
    "required": [
      "order",
      "sample_id",
      "donor",
      "condition",
      "batch",
      "treatment",
      "sequencing_layout",
      "read1_fastq",
      "read2_fastq"
    ],
    "properties": {
      "order": {"type": "integer", "minimum": 1},
      "sample_id": {"type": "string", "minLength": 1},
      "donor": {"type": "string", "minLength": 1},
      "condition": {"type": "string", "minLength": 1},
      "batch": {"type": "string", "minLength": 1},
      "treatment": {"type": "string", "minLength": 1},
      "sequencing_layout": {"const": "paired-end"},
      "read1_fastq": {"type": "string", "minLength": 1},
      "read2_fastq": {"type": "string", "minLength": 1}
    }
  }
}